I've got your problem fixed, Brian!
Coords for SABA (spelled JUANCHO_YRAUSQUIN, not "Jaun...") are as follows:
N17* 38.70'
W63* 13.30'
Which is what you entered. I put exactly what you had into my apt file, and while setting at TNCM, the FMS showed SABA was 39nm away, not the 25nm it really is. And I found out why. You entered your coordinates as 17.3870 and -63.1330. This does not work. You need to divide the 38.70' minutes (' stands for minutes) by 60. As well as the 13.30 minutes. This will give you the decimal form of the coords (which is the format the apt data file uses). Doing the math, that means you need to enter the coords as 17.645000 and -63.221666. After I did that my FMS showed SABA as being 25nm form TNCM (where I was setting). Good to go!
I didn't do the math for the runway coordinates, so you'll have to re-do those for yourself

.
Also when you enter the data into the apt file, be sure that the numbers in your columns line up with the ones above and below it (same number of #s and spaces). I don't know if this matters, but it can't hurt.
Also, I used the identifier of both SABA and the ICAO code for Juancho, which is TNCS. Both worked, so whichever you prefer I guess.
I hope all of that made sense...